Category Archives: Concilience

Exploration Before Population – A Precis on a Hospital Microbiome Study Planning Session

I heard about the microbiome study and did a quick search, printed something out (these aren’t always easy to find) and added the article to my reading pile.  I don’t read at the computer.  I find that it is kind of like trying to read the writing on a light bulb – while the bulb is turned on….  My screen is turned down quite a bit but, that just delays the reading fatigue.  Hmmm…. maybe there is an article on this?

Anyways, the paper I printed turned out to be the minutes of a meeting on the planning of the hospital microbiome project at the University of Chicago Medical Center.  It is an interesting read!

 

The Article:

Smith, D., Alverdy, J., An, G., Coleman, M., Garcia-Houchins, S., Green, J., Keegan, K., Kelley, S.T., Kirkup, B.C., Kociolek, L., Levin, H., Landon, E., Olsiewski, P., Knight, R., Siegel, J., Weber, S., and Gilbert, J.  2013.  The Hospital Microbiome Project:  Meeting Report for the 1st Hospital Microbiome Project Workshop on Sampling Design and Building Science Measurements, Chicago, USA, June 7th-8th 2012.  Standards in Genomic Sciences  8(1), 112-117.  Published Online Apr 15, 2013.  doi:  10.4056/sigs.3717348

 

My Precis

This is a planning discussion for a study that will sample the environment of a hospital and its occupants, beginning before construction is complete to look at how hospital acquired infections are contracted and transmitted.

 

My Precis Expanded:

A lack of research into how hospital acquired infections are acquired and transmitted has prompted an investigation in a new hospital pavilion with the research scheduled to begin before the pavilion opens. When the building opens the building itself will then be exposed to health care workers, patients and visitors. This paper discusses how a systematic exploration, beginning with the architectural design and maintenance of the building and utilities could be used to track the progress of microbial community succession.

The planning meeting of this long-term research project included discussion on the architectural design and maintenance of the building and utilities as well as the materials and processes used and to be used. It was decided that two rooms were to be sampled daily and another 18 rooms on a weekly schedule and that the schedule would include the collecting of any “samples of interest.” The current tracking of staff between rooms and staff self-tracking in their usage of items such as glove boxes was added to the sampling schedules.

Another meeting will be held after the project has begun.

 

 

I found the original article here:

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3739179/

If you have any trouble locating the article please contact me or, call your local college or university library for assistance.

 

There is a wonderful website here:  http://hospitalmicrobiome.com/

 

A (Non-Earth Shattering) Precis on Ancient Rice Agriculture

I have a favourite subject at school, archaeology.  I don’t see the digging up of artifacts as a means to an end and by this I mean:  identify, catalogue, store or display, move on….  I do mean that I believe we can combine the knowledge we gain about what was happening a million years ago, a thousand years ago, yesterday — and use our insights to discover who we are today and where we are going.

I have written a precis.  I write very short summaries when I am doing research papers for the classes I take at the local polytechnic. This one was partially written as I studied for a final exam.  I have finished it to place it here.

 

Anping, P., 1998. Notes on New Advancements and Revelations in the Agricultural Archaeology of Early Rice Domestication in the Dongting Lake Region. Antiquity 72, 878-885.

 

My Precis

Ancient grains of rice found in Liyang Plain archaeological sites reveal to us that rice agriculture may have developed quickly in this region and concurrently with other, nearby sites.

 

My Precis Expanded:

The Liyang Plain lies to the north of Dongting Lake and includes the Li River and the associated lake and tributary system. The area has abundant rainfall and sunshine which result in favourable geographical and environmental conditions for humans and agriculture.

The archaeological site of Pengtoushan was uncovered in 1988 and Bashidang was discovered soon after. Six excavations in the Bashidang have revealed Neolithic sites that yielded rice kernels as well as other plant and animal remains. Prof. Zhang Wenru of the Chinese Agricultural University was invited to do a preliminary assessment of the Bashidang rice and three major characteristics of the Bashidang rice as a ‘small grain ancient rice’ were identified.

Findings in these sites show that the population dates from early Paleolithic until Neolithic periods with domesticated and wild rice remains dating to 10,000 B.P. Rice culture developed here very quickly, possibly with the aid of good environmental and climate conditions that encouraged population growth in the area.

 

I found the original article here:

http://web.b.ebscohost.com.ezproxy.kwantlen.ca:2080/ehost/detail/detail?vid=4&sid=e96e7ff0-7e78-418a-811f-5470a5cba853%40sessionmgr110&hid=123&bdata=JnNpdGU9ZWhvc3QtbGl2ZSZzY29wZT1zaXRl#db=aph&AN=1460047

If you have any trouble locating the article please contact me or, call your local college or university library for assistance.

 

Please leave a comment.  Whether you agree or disagree with what I have understood from this article, your thoughts are of interest to me.  All published articles are, or should be, available to everyone.  Sometimes it takes a bit of effort…

 

A Precis on Pink Salmon

We enjoy watching birds in bird houses!

Bees get bee boxes

Salmon have a better chance of successfully spawning in purpose-built spawning channels.

I have written a precis.  I write very short summaries when I am doing research papers for the classes I take at the local polytechnic.  I think it might make sense to put some of them here.

It is salmon season in British Columbia and so I have randomly chosen a research article on salmon spawning.

The Article:

Cook, K.V., McConnachie, S.H., Gilmour, K.M., Hinch, S.G., Cooke, S.J., 2011. Fitness and Behavioral Correlates of Pre-Stress and Stress-Induced Plasma Cortisol Titers in Pink Salmon (Oncorhynchus gorbuscha) Upon Arrival at Spawning Grounds. Hormones and Behavior, 60, 489-497.

My Precis

Aiding Pacific Pink Salmon with purpose-built spawning channels lowers stress levels and increases the chances of successful spawning.

My precis, expanded:

The hormone cortisol is produced by Pacific salmon en route to spawning grounds as a response to coping with the necessary imperative of spawning. As Pacific salmon have only a single breeding opportunity in their lifetime the natural stress effect of “natal stream homing” produces large amounts of cortisol and results in an early death.

The salmon in this study arrived in a fully monitored holding area where they were counted and examined before being released into an artificial spawning channel. Continued observation showed that the longer a female was in the spawning channel, the greater the chance she had of dropping and defending her eggs successfully. This study links reproductive success to cortisol levels and the findings are consistent with other studies and with evolutionary theory in that cortisol levels and stress response are indicators of sexual maturity and spawning success.

More variability in cortisol levels have been found in salmon spawning in the wild than in artificial spawning runs suggests that there may be factors for success other than cortisol levels to be taken into account. Comparatively, there is a greater chance of spawning success in purpose-built spawning channels than in the wild.

Find the original article here:

http://www.fecpl.ca/wp-content/uploads/2013/06/HB-Cook-et-al-2011.pdf

If you have any trouble locating the article please contact me or, call your local college or university library for assistance.

Please leave a comment.  Whether you agree or disagree with what I have understood from this article, your thoughts are of interest to me.  All published articles are, or should be, available to everyone.  Sometimes it takes a bit of effort…